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Salvation and the Cleansing of Our Spirit—Part 1

Salvation and the Cleansing of Our Spirit—Part 1

The apostle Paul wrote,

May God himself, the God of peace, sanctify you through and through. May your whole spirit, soul and body be kept blameless at the coming of our Lord Jesus Christ (1 Thessalonians 5:23 NIV84).

Is it just a coincidence that Paul lists these three domains—spirit, soul, and body—in the order he does, or is it inspired? Does it reveal that healing starts with the spirit, moves to the soul, and ends with the body?

The Greek word translated as “body” is soma and refers to the physical structure of our being, which is the easiest for us to identify and differentiate from soul and spirit. The Bible is filled with many instructions for the health of the body—guidance on hygiene, diet, exercise, and rest. If we use the metaphor of a computer, the soma would correspond to the hardware, the physical components of the machine that one can touch.

The Greek word for “soul” is psyche, from which we get words like “psychiatry” and “psychology”, and refers to our individuality, character, unique personhood; the psyche would correspond to the software on a computer, encompassing all the things we learn, such as our language, and what we hold to be true, our values, morals, and beliefs—thus, it is our mind.

The Greek word for “spirit” is pneuma and is translated into a variety of English words, such as wind, spirit, ghost, and breath—as in the “breath of life.” The spirit, breath of life, corresponds to the energy of our being and, first and foremost, is the life-giving energy from God.

The LORD God formed the man from the dust of the ground [body] and breathed into his nostrils the breath of life [spirit], and the man became a living being (Genesis 2:7 NIV84).

When a person dies, God’s creation reverses this process; the body goes back to dirt and the breath of life, the life energy from God, the “spirit,” returns to God:

The dust returns to the ground it came from, and the spirit returns to God who gave it (Ecclesiastes 12:7 NIV84)

The word “spirit” here is used to indicate the breath of life, the life energy. But the word has additional meanings that Paul applies when writing to the Corinthians:

Even though I am not physically present, I am with you in spirit … when you are assembled in the name of our Lord Jesus and I am with you in spirit, and the power of our Lord Jesus is present (1 Corinthians 5:3, 4 NIV84).

Our spirit, as Paul uses the term above, refers to our affections, attitudes of the heart, and true motives of action, and it is where God works via His Spirit to cause us to be dissatisfied with sin, to give us a longing for something more, to create a conviction, an uneasy restlessness, when we are departing from Him and His path for our lives. The spirit is our innermost heart’s desires, preferences, and alignments—what we resonate with and also the attitudinal atmosphere we both create and prefer. Do we have a spirit of love or hate, of kindness or cruelty, of humility or arrogance, of gentleness or brutality, of fear or courage?

Think about your closest loved one, perhaps a child or spouse, going on a dangerous trip, perhaps to a war zone, and, with tears, you say to them, “I will be with you in spirit.” What do you mean? Are you saying you will go along with them bodily, in person? No, you will not be with them physically when you are with them in spirit. Are you saying that you are going to have an out-of-body experience and float alongside them in some ghost-like apparition? Of course not.

You are saying that you will be with them in heart, sympathy, compassion, attitude, desiring for their good, sharing in their struggles and hurts, rejoicing in their triumphs, celebrating their success, keeping their health, welfare, and good foremost in your affections and prayers. You have your heart’s energies oriented toward them for their good. To be with your child in spirit is to be in harmony with them in your inmost being, resonating and connecting with them along unseen energy bonds of the quantum universe that God has created. It is the alignment of one’s heart, affection, goodwill, and intentions for another’s health and happiness.

The way God created human beings, after Adam received the “spirit,” the breath of life, from his Creator, he had the ability to impact and shape, change, alter, and influence the tenor, vibration, character, condition, quality, and purity of that energy. Just as we can contaminate pure water and make it foul, so also we can contaminate the pure energy we receive from God. In fact, through Adam’s sin, he contaminated the pure motivation and animating energy of love with fear and selfishness, and we are all born with a life, a spirit, that we received from Adam that is already contaminated with fear and selfishness that need spiritual cleansing (Psalm 51:5). This is what Paul is telling us when he informs us that our entire being needs sanctifying—our motivational energies (spirits, pneuma) need to be sanctified.

 

How Salvation Actually Works

But what does this mean in practical terms? It means that salvation requires cleansing of the spirit from the contamination of sin (fear and selfishness). Salvation—cleansing, the removal of sin—starts with our spirits (pneuma), moves into our souls/minds (psyche), and ends with our bodies (soma) at the Second Coming.

In order to intelligently cooperate most effectively with God for the cleansing of our spirits, we must understand what our spirit is. The spirit is the part of our being that connects with the Spirit of God and is the means whereby God inspires, energizes, encourages, motivates, and convicts us. Our spirit is where the healing energy of God interacts with our energy, (inmost desires and motivations) to influence us. The Spirit is the vitalizing power of God that brings life.

Jesus said, “The Spirit gives life; the flesh counts for nothing” (John 6:63 NIV84).

The spirit is the wellspring, the energy source, the life-giving power that fuels our being—it is the breath of life given to us by God, but the Holy Spirit is the sustaining, healing, purifying, invigorating, inspiring, transforming, renewing, regenerating power of God that cleanses our spirits, enlightens our minds, inspires our songs, motivates our hearts, cleanses our consciences, ennobles our minds, and seals us to God’s kingdom of love.

And you also were included in Christ when you heard the word of truth, the gospel of your salvation. Having believed, you were marked in him with a seal, the promised Holy Spirit, who is a deposit guaranteeing our inheritance until the redemption of those who are God’s possession—to the praise of his glory (Ephesians 1:13, 14 NIV84).

It is the Holy Spirit that brings us the new healthy desires, motives, and presence of Jesus. It is via the Holy Spirit that we become partakers of the divine nature (2 Peter 1:4). But when the Spirit moves upon our hearts, our inmost beings, we must choose to say “yes” to the leading of the Spirit—to forgive, to reject the old carnal ways of dishonesty, selfishness, evil surmising, gossiping, jealousy, revenge—and, instead, align our hearts with the “Spirit,” the attitude of Jesus Himself—to love our enemies and bless those who persecute us.

Jesus said to His disciples, when they asked if they should call fire down on the Samaritans,

“You do not know what manner of spirit you are of. For the Son of Man did not come to destroy men’s lives but to save them” (Luke 9:55-56 NKJV, emphasis mine).

The disciples were fostering a spirit of God’s enemy, of revenge rather than a spirit of love and grace. They needed spiritual cleansing!

While the Holy Spirit brings us the truth, love, and conviction, it is up to us to accept or reject the cleansing energies of God’s Spirit; if, instead of having our spirits cleansed, we cling to resentment, bitterness, unforgiveness, unkindness, jealously, a desire for revenge etc., we grieve the Spirit (Ephesians 4:30).

But as we respond to the movements of the Holy Spirit upon our spirit, we move from merely being kept physically alive and sought after by the Holy Spirit, like the shepherd seeking the lost sheep, to actual thriving! When we choose to stay connected to God in a living faith/trust relationship, we experience the vitalizing power of God purifying our spirits. When we surrender our hearts and minds to Jesus in faith, it is then that we receive the indwelling presence of the Holy Spirit, who renews our spirits, transforms our motives, desires, hearts, and attitudes, and purifies our inmost being with love, joy, hope, and truth by taking what Jesus achieved and reproducing His spirit in us. As Paul wrote, “I have been crucified with Christ and I no longer live, but Christ lives in me” (Galatians 2:20 NIV84).

But if we do not remain in a living faith/trust relationship with God—if, instead, we go our own way and do our own thing after our conversion—that would be like tying a plastic bag over our heads and cutting ourselves off from life-giving refreshing air. If we cut ourselves off from the Holy Spirit, we only breathe back into our souls the spiritual waste, fears, uncertainties, guilt, shame, doubts, mistakes, misunderstandings, shortcomings, denials, rationalizations, heartaches, hurts, disappointments, and wrongs. Our spirits will then slowly lose the heavenly atmosphere of joy, peace, patience, love, and hope. Just like the air inside the plastic bag becomes stale, so our spirits become stale, stagnant—and just like what happens when we breathe in the stale air, our spirits eventually lose energy and drive, and we become discouraged and are tempted to give up.

But when we retain our life-giving faith connection with God, our daily communion with Him, then we daily breathe in God’s Spirit and are filled with the presence of God, His life, His energy, His love, His affection, kindness, goodness, grace, truth, and power. 

Our spirit is our life energy. God’s Spirit is the full energy of the divine third Person of the Godhead who unites with us with the full power of the Godhead, bringing us the “Spirit” of the Lord—the new attitude of love rather than hate. As Paul wrote to Timothy,

For God has not given us a spirit of fear, but of power and of love and of a sound mind (2 Timothy 1:7 NKJV).

I encourage you to be purposeful in your daily routines, to start every day in personal communion with God, meditating upon His Word, His creation, His providences, and talking with Him. Invite the Holy Spirit into your heart to cleanse, renew, refresh, and invigorate your spirit so that you will experience “the fruit of the Spirit [which] is love, joy, peace, patience, kindness, goodness, faithfulness, gentleness and self-control” (Galatians 5:22, 23 NIV84).

And as Paul wrote to the Philippians, I close with this desire for you:

If you have any encouragement from being united with Christ, if any comfort from his love, if any fellowship with the Spirit, if any tenderness and compassion, then make my joy complete by being like-minded, having the same love, being one in spirit and purpose (Philippians 2:1, 2 NIV84).

 

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Testimony 37

Hearing Dr. Jennings’ presentations in person came at a pivotal moment in my spiritual journey that began about nine months ago, when the fault lines inherent in my belief system began to crack under questions that most reasonable people end up asking about God and His nature. These were questions I couldn’t find answers to, and they shook my faith. I was unable let it go any longer and be satisfied. My Christian experience became distant. I was afraid; the fear in me rose like thorns, pushing me away from Jesus. And then someone heard my questions and introduced me to this ministry, and my life has totally changed.

I can tell you that this new, “present truth” message is far grander and life-changing than when I shifted from being an agnostic and then a nominal Christian. It has radically altered my worldview, because it reveals a God that makes sense. It is a revolution. I believe that Dr. Jennings’ message is the final message that must go to the world. If any message could be called “righteousness by faith,” as abused as that term is by the right and the left, this is that message, because Jennings’ biblical message identifies a God who is different, whose character isn’t an impossible contradiction.

I walk this path now without fear. I see people differently, and the Holy Spirit burns in my heart. Many call Dr. Jennings’ message false and compromising, but it isn’t false, because I’ve seen the fruits within my mind and body. It is not compromising, because in this message is the only road to holiness that makes any sense. No longer do I behold a pagan god who is always angry and suspicious. Instead, I behold a God who is freeing and loving, always working for our good, and giving me every reason to love my enemy even to my own death, just as Jesus pleads with us. God is good.

Anthony L., CA, USA

 

Testimony 22

I have found your Bible study class lectures to be very inspiring and useful as I prepare to teach class every other week. I subscribe to the podcast and download your notes on the weeks I teach. The audio and notes are such a great help in preparing. My own understanding of God’s character has grown as I teach the class. Commendations on the thought-provoking and well-prepared material Come and Reason provides. Personally, I get excited by the tie you make between the spiritual and mental/physical domains.

A.A. Corrales, NM, USA

 

Testimony 23

I would just like to add my voice to the many people who, I believe, must have contacted you to express their appreciation for the “Healing the Mind” DVDs. I’ve been listening to your Bible study class discussions for many years and I’ve been personally blessed by your research and teaching about the character of God.

L. G., Oakland, MI, USA

 

Testimony 21

I am absolutly on fire with the message at Come and Reason! I can’t get enough! I’ve read your book, blog, and articles. I’ve listened to your Bible study podcasts, your radio show, and your series – all excellent! It wasn’t until the past couple of years that I have I like I’m becoming “healthy,” with more to share with others than just beasts and commandments! I used to be a Bible worker and preached when the pastors were gone until I had had enough. I didnt realize at the time what the problem was, but i know now… the message wasn’t properly focused. Now my flame is rekindled. All of your little examples are so perfect in explaining something “complicated” and making it easily understood! Now I’m trying to shape it into a life changing evangelistic series! Thank you!

M.T., USA

 

Testimony 72

I am blown away by the truth that you present. God’s Design Law makes so much sense! You have validated my impression that, if God is love, He would not kill those who don’t want to know him. If God gives us choice, then how can He destroy us if our choice is not to follow him. Thank you for opening my eyes and heart to the pure love of God seen through Jesus. The love I now have for Jesus is deeper and free from condemnation. My heart has been opened to love others as Jesus loves me. May God continue to bless your God-given insight into His word and your ministry. The truth has set me free!

H. Miller, Centereach, NY

Testimony 70

I have been watching you for many years and have learned to love God with all my heart. I was raised by a loving Christian mother that had been lied to about who God really was, so our religious upbringing was hell fire and damnation. As soon as I was old enough and moved out, I not only left the church, I ran as fast as I could to get away from it. Sad to say, it wasn’t until the past couple of years that I learned and understand who my Father really is and how much He loves me. I understand God’s Design Laws (which make sense) and when I’m teaching my church Bible study class, I’m able to really put to use the things I’ve been learning and Holy Spirit is leading. Thank you for introducing me to my Father of true, pure love. Everyday with Him is new and exciting. One thing that breaks my heart is that I didn’t know Him sooner. God Bless you and your ministry!

Judy Phelps, Reno, NV, USA

Testimony 1

Thank you! I love listening to the Come And Reason Ministries Bible study classes and am using some of your notes to get the lessons together that I will be teaching. You always have such good quotes and Bible texts and pull things together to make good sense.

T. C., IN, USA

 

Testimony 49

I came into the church at 21, but that is as far as it went. I was so confused about what love is. I couldn’t find it in the bible, because I am not a person that can read between the lines. I have no logic. I have read many, many books; trying to figure out the crux of the matter. They were helpful, but something was still missing. I have become very frustrated to the point of crying out to God, “Where can I go?”  I needed some basics.

I found two books, written by Timothy Jennings, MD, to be very helpful. God showed me that I had lived my whole life in fear. I didn’t even see it. Now, I do. God is so good.  I discovered the “The Remedy”  Dr. Jennings new book, “The God-Shaped Heart!” Oh, I was so excited, I purchased them right away.

I can get rid of most of my books, because “The Remedy” brings the Love of God out so clearly, even I can’t miss it. Now, I want to sit and read my Bible. Wow, what a revelation! It is just simply Awesome! I am so grateful to Jehovah Almighty for hearing my prayer for more understanding! I am so encouraged!

Jackie S.

 

Testimony 24

I wanted to thank you very much for presenting your understanding of God. I’ve always been troubled by this question: Why did Jesus have to die? Since my conversion I understood that The Father & Jesus are one, I did not have issues with that. But was there not any other way to save us than for Jesus to die? I guess I actually had a question about God – if He is so wise, how come He did not find another way? I did not see the real ‘beauty’  in the cross. Only when you explained the picture in the medical context, Jesus providing medicine for my selfishness, have I started to finally ‘see the light’. Thank you so much. Your seminar, “Healing the Mind,” are absolutely marvelous & have shared them with my family and many other people, including colleagues at work. Thanks, thanks, thanks. May God bless you abundantly in your ministry.

M. W., Australia

 

Testimony 36

Thank you and may God continue to bless you as you share with others the intricacies of how we are all “fearfully and wonderfully made”. I must share that you have opened a whole new world to me, and I have found tremendous healing through what you have shared in two of your books, “Could It Be This Simple?” and “The God Shaped Brain.” I praise God for what you shared, what I have learned, and how I have grown and healed! My prayer is that My Precious Jesus will be seen by others in the way I live, act, talk, etc. and they may be encouraged to know He is truly a GREAT God of LOVE, desiring that no one should perish! God Bless you in your continued endeavors to present Him as He really is!

Joleen H. GA, USA

 

Testimony 60

Just watched watched lesson 10 in the 1st quarter 2021 bible study classs on Isaiah. I want to thank you for your intellectual spirituality; it’s not an oxymoron! From the point of view of a teacher I also enjoy seeing how much personal pleasure you clearly take in not just tasting, but feasting on God’s word – it reminds me of Jeremiah not being able to hold it in! It makes me smile that your cup is so full and overflowing that you make it to Tuesday’s lesson (on a good day). It just goes to show the richness of God’s Word.

God bless the Come and Reason Team from our church here in Great Britain.

Andrew H., Great Britain

 

Testimony 65

I have been tuning into your weekly study classes for a while now and wanted express my appreciation for the teachings that ha been a huge blessing in opening up the true message of the word. Viewing scripture under an imposed law theory always, without fail, raised more questions, concerns, and conflicting scripture interpretations that were discouraging at the very least. Looking at scripture through the design law lens has brought more truth to light for me personally and an understanding of our Heavenly Father that places Him “above all others,” where I am now more than thrilled to witness and serve Him.  I “stumbled” across this ministry a year or so ago and would only watch a few minutes at a time. But the more I listened and the longer I paid attention, the more my spiritual eyes were opened to the ever present truths of scripture. The comprehension of the great controversy and it’s origin by the lies perpetrated and perpetuated throughout the Bible on the attack of God’s character and government is truly priceless. Keep up the Good Work! Your servanthood is desperately needed in such a time as this!

Jeff D., Reading, MA, USA

 

Testimony 31

It was very touching to hear the testimony of your class share how viewing God’s true character has changed their lives. My feelings are the same – there is so much freedom in knowing that God LOVES me – regardless of my… just, REGARDLESS! I’m still blown away by the true gospel, the fact that God is not ready to strike us when we fail. He is not arbitrary. He simply loves us and warns of the natural consequences because He can’t stand to see us suffer. I AM IN LOVE WITH THIS GOD!!!

Ceil V.,  UT, USA

 

Testimony 15

I have been sharing Come And Reason Ministries Bible study lessons with several folk. You have such a beautiful view of the plan of salvation. If we had this message preached when I was young, my generation would still all be in church.

H. R., New Zealand

Testimony 35

I am so pleased with the response your message is receiving at my church from the middle-aged to the young adults. I have given out 100 copies of the first two seminars and there are more request every week. One of my [class members] came to me after viewing the series, grateful and impressed with how easy the message was retained. He had been a Seventh-day Adventist in fear all his life, and felt like the scales were removed from his eyes after viewing the seminars. I am so impressed by the change I see in members who have received this message, we are in one accord. However, I am sadden by the negative response of the older people. I am verbally attacked anytime I talk about imposed laws, but I believe my mission is to enlightened everyone I can. I watch your Bible Study Class on YouTube every Friday night and I feel like I am apart of the class. All of you are in one accord and I am so blessed to have found you. I pray that all of you continue to spread this message and I am committed to doing my part.

Clara S., Westfield, MA, USA