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Salvation and the Cleansing of Our Spirit—Part 1

Salvation and the Cleansing of Our Spirit—Part 1

The apostle Paul wrote,

May God himself, the God of peace, sanctify you through and through. May your whole spirit, soul and body be kept blameless at the coming of our Lord Jesus Christ (1 Thessalonians 5:23 NIV84).

Is it just a coincidence that Paul lists these three domains—spirit, soul, and body—in the order he does, or is it inspired? Does it reveal that healing starts with the spirit, moves to the soul, and ends with the body?

The Greek word translated as “body” is soma and refers to the physical structure of our being, which is the easiest for us to identify and differentiate from soul and spirit. The Bible is filled with many instructions for the health of the body—guidance on hygiene, diet, exercise, and rest. If we use the metaphor of a computer, the soma would correspond to the hardware, the physical components of the machine that one can touch.

The Greek word for “soul” is psyche, from which we get words like “psychiatry” and “psychology”, and refers to our individuality, character, unique personhood; the psyche would correspond to the software on a computer, encompassing all the things we learn, such as our language, and what we hold to be true, our values, morals, and beliefs—thus, it is our mind.

The Greek word for “spirit” is pneuma and is translated into a variety of English words, such as wind, spirit, ghost, and breath—as in the “breath of life.” The spirit, breath of life, corresponds to the energy of our being and, first and foremost, is the life-giving energy from God.

The LORD God formed the man from the dust of the ground [body] and breathed into his nostrils the breath of life [spirit], and the man became a living being (Genesis 2:7 NIV84).

When a person dies, God’s creation reverses this process; the body goes back to dirt and the breath of life, the life energy from God, the “spirit,” returns to God:

The dust returns to the ground it came from, and the spirit returns to God who gave it (Ecclesiastes 12:7 NIV84)

The word “spirit” here is used to indicate the breath of life, the life energy. But the word has additional meanings that Paul applies when writing to the Corinthians:

Even though I am not physically present, I am with you in spirit … when you are assembled in the name of our Lord Jesus and I am with you in spirit, and the power of our Lord Jesus is present (1 Corinthians 5:3, 4 NIV84).

Our spirit, as Paul uses the term above, refers to our affections, attitudes of the heart, and true motives of action, and it is where God works via His Spirit to cause us to be dissatisfied with sin, to give us a longing for something more, to create a conviction, an uneasy restlessness, when we are departing from Him and His path for our lives. The spirit is our innermost heart’s desires, preferences, and alignments—what we resonate with and also the attitudinal atmosphere we both create and prefer. Do we have a spirit of love or hate, of kindness or cruelty, of humility or arrogance, of gentleness or brutality, of fear or courage?

Think about your closest loved one, perhaps a child or spouse, going on a dangerous trip, perhaps to a war zone, and, with tears, you say to them, “I will be with you in spirit.” What do you mean? Are you saying you will go along with them bodily, in person? No, you will not be with them physically when you are with them in spirit. Are you saying that you are going to have an out-of-body experience and float alongside them in some ghost-like apparition? Of course not.

You are saying that you will be with them in heart, sympathy, compassion, attitude, desiring for their good, sharing in their struggles and hurts, rejoicing in their triumphs, celebrating their success, keeping their health, welfare, and good foremost in your affections and prayers. You have your heart’s energies oriented toward them for their good. To be with your child in spirit is to be in harmony with them in your inmost being, resonating and connecting with them along unseen energy bonds of the quantum universe that God has created. It is the alignment of one’s heart, affection, goodwill, and intentions for another’s health and happiness.

The way God created human beings, after Adam received the “spirit,” the breath of life, from his Creator, he had the ability to impact and shape, change, alter, and influence the tenor, vibration, character, condition, quality, and purity of that energy. Just as we can contaminate pure water and make it foul, so also we can contaminate the pure energy we receive from God. In fact, through Adam’s sin, he contaminated the pure motivation and animating energy of love with fear and selfishness, and we are all born with a life, a spirit, that we received from Adam that is already contaminated with fear and selfishness that need spiritual cleansing (Psalm 51:5). This is what Paul is telling us when he informs us that our entire being needs sanctifying—our motivational energies (spirits, pneuma) need to be sanctified.

 

How Salvation Actually Works

But what does this mean in practical terms? It means that salvation requires cleansing of the spirit from the contamination of sin (fear and selfishness). Salvation—cleansing, the removal of sin—starts with our spirits (pneuma), moves into our souls/minds (psyche), and ends with our bodies (soma) at the Second Coming.

In order to intelligently cooperate most effectively with God for the cleansing of our spirits, we must understand what our spirit is. The spirit is the part of our being that connects with the Spirit of God and is the means whereby God inspires, energizes, encourages, motivates, and convicts us. Our spirit is where the healing energy of God interacts with our energy, (inmost desires and motivations) to influence us. The Spirit is the vitalizing power of God that brings life.

Jesus said, “The Spirit gives life; the flesh counts for nothing” (John 6:63 NIV84).

The spirit is the wellspring, the energy source, the life-giving power that fuels our being—it is the breath of life given to us by God, but the Holy Spirit is the sustaining, healing, purifying, invigorating, inspiring, transforming, renewing, regenerating power of God that cleanses our spirits, enlightens our minds, inspires our songs, motivates our hearts, cleanses our consciences, ennobles our minds, and seals us to God’s kingdom of love.

And you also were included in Christ when you heard the word of truth, the gospel of your salvation. Having believed, you were marked in him with a seal, the promised Holy Spirit, who is a deposit guaranteeing our inheritance until the redemption of those who are God’s possession—to the praise of his glory (Ephesians 1:13, 14 NIV84).

It is the Holy Spirit that brings us the new healthy desires, motives, and presence of Jesus. It is via the Holy Spirit that we become partakers of the divine nature (2 Peter 1:4). But when the Spirit moves upon our hearts, our inmost beings, we must choose to say “yes” to the leading of the Spirit—to forgive, to reject the old carnal ways of dishonesty, selfishness, evil surmising, gossiping, jealousy, revenge—and, instead, align our hearts with the “Spirit,” the attitude of Jesus Himself—to love our enemies and bless those who persecute us.

Jesus said to His disciples, when they asked if they should call fire down on the Samaritans,

“You do not know what manner of spirit you are of. For the Son of Man did not come to destroy men’s lives but to save them” (Luke 9:55-56 NKJV, emphasis mine).

The disciples were fostering a spirit of God’s enemy, of revenge rather than a spirit of love and grace. They needed spiritual cleansing!

While the Holy Spirit brings us the truth, love, and conviction, it is up to us to accept or reject the cleansing energies of God’s Spirit; if, instead of having our spirits cleansed, we cling to resentment, bitterness, unforgiveness, unkindness, jealously, a desire for revenge etc., we grieve the Spirit (Ephesians 4:30).

But as we respond to the movements of the Holy Spirit upon our spirit, we move from merely being kept physically alive and sought after by the Holy Spirit, like the shepherd seeking the lost sheep, to actual thriving! When we choose to stay connected to God in a living faith/trust relationship, we experience the vitalizing power of God purifying our spirits. When we surrender our hearts and minds to Jesus in faith, it is then that we receive the indwelling presence of the Holy Spirit, who renews our spirits, transforms our motives, desires, hearts, and attitudes, and purifies our inmost being with love, joy, hope, and truth by taking what Jesus achieved and reproducing His spirit in us. As Paul wrote, “I have been crucified with Christ and I no longer live, but Christ lives in me” (Galatians 2:20 NIV84).

But if we do not remain in a living faith/trust relationship with God—if, instead, we go our own way and do our own thing after our conversion—that would be like tying a plastic bag over our heads and cutting ourselves off from life-giving refreshing air. If we cut ourselves off from the Holy Spirit, we only breathe back into our souls the spiritual waste, fears, uncertainties, guilt, shame, doubts, mistakes, misunderstandings, shortcomings, denials, rationalizations, heartaches, hurts, disappointments, and wrongs. Our spirits will then slowly lose the heavenly atmosphere of joy, peace, patience, love, and hope. Just like the air inside the plastic bag becomes stale, so our spirits become stale, stagnant—and just like what happens when we breathe in the stale air, our spirits eventually lose energy and drive, and we become discouraged and are tempted to give up.

But when we retain our life-giving faith connection with God, our daily communion with Him, then we daily breathe in God’s Spirit and are filled with the presence of God, His life, His energy, His love, His affection, kindness, goodness, grace, truth, and power. 

Our spirit is our life energy. God’s Spirit is the full energy of the divine third Person of the Godhead who unites with us with the full power of the Godhead, bringing us the “Spirit” of the Lord—the new attitude of love rather than hate. As Paul wrote to Timothy,

For God has not given us a spirit of fear, but of power and of love and of a sound mind (2 Timothy 1:7 NKJV).

I encourage you to be purposeful in your daily routines, to start every day in personal communion with God, meditating upon His Word, His creation, His providences, and talking with Him. Invite the Holy Spirit into your heart to cleanse, renew, refresh, and invigorate your spirit so that you will experience “the fruit of the Spirit [which] is love, joy, peace, patience, kindness, goodness, faithfulness, gentleness and self-control” (Galatians 5:22, 23 NIV84).

And as Paul wrote to the Philippians, I close with this desire for you:

If you have any encouragement from being united with Christ, if any comfort from his love, if any fellowship with the Spirit, if any tenderness and compassion, then make my joy complete by being like-minded, having the same love, being one in spirit and purpose (Philippians 2:1, 2 NIV84).

 

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Testimony 34

I was introduced to Come and Reason Ministries by accident, via a passing comment made in a bible study class we were visiting. I checked this website out and my life was changed. The understanding of the truth of God’s character, and how we apply it, is so right. The tricky part is consistently applying which “lens” to look through. As I began to understand, I started sharing the basics of this understanding with a discussion group I was leading and, suddenly, a lot of things started to make sense that never used to. At the same time, I enjoyed an amazing opportunity. I was able to conduct a full bible study at WORK! What an amazing experience! It is such a joy to share the truth about God and to share how it all fits in the war between God and Satan. So many people benefit when we have a correct understanding about how God works and who He really is! Thank you for this transformational understanding. Keep up the good work! God Bless you!

Tony P., CA, USA

 

Testimony 27

Your teachings about our heavenly Father have changed my life. Thank you sooooooo very very much! I know He’s doing some serious healing in my heart and life and I look forward to each new day to learn something new about Him and to just hear you speak about Him. Thank you, forever.

Nancy S.

 

Testimony 28

I have been following your Bible study class for about a year now. I must say I am impressed with how your ministry has grown. I took it upon myself to listen to all your lesson podcasts from the past and they have both enriched me physically, mentally, emotionally and spiritually. I have learnt a lot from this class. I have also noticed how the class has grown in spiritual strength. One of the things that benefited me is that now I am not afraid of God. I use to be, but now it has melted away. The second thing is that you helped me to have a real life relationship with God. Now He is my friend that was always there and I love having him with me all the time. Thirdly, because of this class, it inspired me to take over and lead a class. I have called it “Let Us Reason Together,” adapting your inquisitive style and creating a class of free thinkers.

T. Banda, Malawi, Africa

 

Testimony 49

I came into the church at 21, but that is as far as it went. I was so confused about what love is. I couldn’t find it in the bible, because I am not a person that can read between the lines. I have no logic. I have read many, many books; trying to figure out the crux of the matter. They were helpful, but something was still missing. I have become very frustrated to the point of crying out to God, “Where can I go?”  I needed some basics.

I found two books, written by Timothy Jennings, MD, to be very helpful. God showed me that I had lived my whole life in fear. I didn’t even see it. Now, I do. God is so good.  I discovered the “The Remedy”  Dr. Jennings new book, “The God-Shaped Heart!” Oh, I was so excited, I purchased them right away.

I can get rid of most of my books, because “The Remedy” brings the Love of God out so clearly, even I can’t miss it. Now, I want to sit and read my Bible. Wow, what a revelation! It is just simply Awesome! I am so grateful to Jehovah Almighty for hearing my prayer for more understanding! I am so encouraged!

Jackie S.

 

Testimony 29

Thank you for all of your work to correct misconceptions about God’s character. So many people that my husband and I have talked to seem to be against the natural law construct and view it as “errant” and “dangerous.” Having learned more about it through your blogs and lessons, I don’t really understand why they view it that way, except that it means they have to relearn theology they have known for their entire lives. But I’m so excited to relearn this. For the past few years I have been questioning how I could trust a God who punishes arbitrarily and is full of wrath for those who don’t obey His commands. That view made me afraid to “mess up” or “not be good enough,” even within my relationship with God. I really appreciated the point you bring out about God not wanting us to serve Him because we are afraid, but because we love Him.

Melissa H., IN, USA

 

Testimony 53

I was so blessed by a friend who gave me your book, “The God Shaped Brain,” while I was sitting in church asking God to please help me learn more about Him and help me not to be so confused and scared. That was about 2 years ago. Your books have helped me to love God even more. I’m not confused or scared anymore! I have listened to all of your bible study classes and feel like I know the wonderful people that attend every week. Thank you for all that you’re doing in spreading the true message about God and His law of love. God bless you and your whole class.

Elssy P., Modesto, CA, USA

 

Testimony 59

I’m a native Ghanan, but am currently in France for my master’s degree. Prior to this, during my final years at undergraduate studies in Ghana, I was introduced to your ministry and I’ve been immensely blessed by what you share, especially about the Design and Imposed Laws. God richly bless you for that.

One of the first things I did when I arrived in France was to buy all four of your books. They not only helped me, but those I shared them with. I shared the message with an atheist student and I marveled at how God worked mightily in his life. Today this person shares the Love of God with others and debunks theories of who God is not. I want to share what you present in your “Heavenly Sanctuary and Investigative Judgment” pamphlet, because the message brought rest to my soul and I live today as a healthy person.

God bless you so much and your ministry.

Michael A., Ghana

 

Testimony 55

I was born [into the church], then I left it for many years. 10 years ago, I came back, but I could not take the hypocrisy and the lack of answers to the missing pieces. I struggled, but I did not abandon my commitment to know the truth. God is leading me to the simple understanding of his relevance and I am relearning what the church taught me as a youth… that he loves me, that he has led me to a knowledge of him such as I have never known. He is using Dr. Jennings to connect the dots that are now so apparent and hiding in plain sight!

Dean P., Arlington, TX, USA

 

Testimony 65

I have been tuning into your weekly study classes for a while now and wanted express my appreciation for the teachings that ha been a huge blessing in opening up the true message of the word. Viewing scripture under an imposed law theory always, without fail, raised more questions, concerns, and conflicting scripture interpretations that were discouraging at the very least. Looking at scripture through the design law lens has brought more truth to light for me personally and an understanding of our Heavenly Father that places Him “above all others,” where I am now more than thrilled to witness and serve Him.  I “stumbled” across this ministry a year or so ago and would only watch a few minutes at a time. But the more I listened and the longer I paid attention, the more my spiritual eyes were opened to the ever present truths of scripture. The comprehension of the great controversy and it’s origin by the lies perpetrated and perpetuated throughout the Bible on the attack of God’s character and government is truly priceless. Keep up the Good Work! Your servanthood is desperately needed in such a time as this!

Jeff D., Reading, MA, USA

 

Testimony 68

Your message of design law vs imperial law is so uplifting and makes so much sense- it is a game changer for me. The fact that Jesus’s death is not a big payment by an angry God is , quite frankly, a relief.

Laura G., London, Ontario, Canada

 

Testimony 70

I have been watching you for many years and have learned to love God with all my heart. I was raised by a loving Christian mother that had been lied to about who God really was, so our religious upbringing was hell fire and damnation. As soon as I was old enough and moved out, I not only left the church, I ran as fast as I could to get away from it. Sad to say, it wasn’t until the past couple of years that I learned and understand who my Father really is and how much He loves me. I understand God’s Design Laws (which make sense) and when I’m teaching my church Bible study class, I’m able to really put to use the things I’ve been learning and Holy Spirit is leading. Thank you for introducing me to my Father of true, pure love. Everyday with Him is new and exciting. One thing that breaks my heart is that I didn’t know Him sooner. God Bless you and your ministry!

Judy Phelps, Reno, NV, USA

Testimony 12

I have been really blessed reading your response to the various questions on your site.

K.C., OH, USA

 

Testimony 2

I continue to enjoy your lessons every week. The more that I research your conclusions, the more I am convinced that the Holy Spirit has lead you to distill out the essence of human redemption. Thank you for your courageous stand for the truth.

S. G., TX, USA

 

Testimony 47

I can’t even begin to thank you and your ministry enough for introducing me to the Truth about a loving and merciful God! I have my daughter and her in-laws to thank for sharing with me “The God-Shaped Brain” as well as your website. I listen to the Bible study class lessons on my daily walk. May God continue to bless your thirst-quenching ministry!

Liz H., Port Angeles, WA, USA

 

 

Testimony 30

God lead me to your book “The God-Shaped Brain” while I was searching for another book about the brain and then to your interview about your book on HeartWise Ministries [where] I found out about [Come And Reason Ministries]. I’m now devouring the webcasts of your Bible studies. I have been so greatly blessed and I thank God so much for your courage to speak the Truth in love no matter what. Listening to you contrast the two opposing systems (laws) and digging deep to unearth the hidden treasures in the Bible makes me so incredibly happy and I feel very blessed to be part of your Bible Study Group although I live far away. I am just so excited that there is a group of people that is spreading the Truth about the character of God and it saddens me how few realize what our Father in Heaven is really like.

Kessy B., Australia